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Here is a really good plugin. It helps you see the method calls in your code.
http://eclipse-tools.sourceforge.net/call-hierarchy/

Otherwise I think Eclipse has everything you need from the beginning.

This site is pretty cool for setting up your own Eclipse configuration.
http://eclipsediscovery.yoxos.com/discovery/rap

The subversion plugin is good as well but I doubt you will need that, unless you are part of a project.